Protein Bagels With Whole Wheat

Highlighted under: Balanced Food Studio

I absolutely love making these Protein Bagels With Whole Wheat! They are a fantastic way to start the day, packed with flavor and nourishing ingredients. I’ve experimented with various recipes over the years, but this one strikes the perfect balance between taste and nutrition. Using whole wheat flour not only enhances the flavor but also boosts the fiber content. You can enjoy them plain or add your favorite toppings for a wholesome breakfast that keeps me energized all morning long.

Skylar Jennings

Created by

Skylar Jennings

Last updated on 2026-02-15T03:49:36.262Z

During one of my weekend baking sessions, I decided to experiment with protein-packed ingredients. I always wanted a bagel that didn't leave me feeling heavy, yet still nourished my body. Whole wheat flour became my secret weapon, improving both the texture and the health benefits.

After perfecting the rise and bake, I realized that adding Greek yogurt to the mix created a delightful chewy texture. I recommend letting them cool completely before slicing, as this makes them easier to handle and enhances their flavor!

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Why You'll Love These Bagels

  • Wholesome ingredients power these bagels with energy.
  • The chewy texture is both satisfying and delightful.
  • Perfect for meal prep and versatile with toppings.

Ingredient Focus: Whole Wheat Flour

The choice of whole wheat flour is essential for the flavor and texture of these bagels. Unlike all-purpose flour, whole wheat flour contains more of the grain, preserving fiber, vitamins, and minerals. This not only contributes to a nuttier taste but also enhances the health benefits, making these bagels a more nutritious option. You might notice that whole wheat flour absorbs more moisture than white flour, so be prepared to adjust the amount of yogurt or water to achieve the right dough consistency.

When mixing, aim for a dough that is slightly tacky but not overly sticky. A well-kneaded dough is crucial to developing the bagels’ chewy texture, which is archetypal for bagels. Kneading for about 5–7 minutes until the dough is smooth is a good target, letting the gluten develop effectively. If at any point the dough seems too difficult to work with, a light dusting of flour on your hands or the counter can help manage stickiness.

Perfecting the Bagel Shape

Shaping the bagels correctly is key to achieving that classic bagel look and feel. After dividing the dough, rolling each piece into a tight ball before forming it into a disc can help ensure an even density. When creating the hole, be sure to make it larger than you think necessary; the dough will puff up as it bakes. A hole that’s roughly 1-2 inches wide should do the trick. If the hole tightens during shaping, simply poke it again to maintain that perfect bagel form.

Don't worry if your bagels aren’t perfectly uniform; it adds to their homemade charm! Still, if you’re aiming for consistent sizes, a kitchen scale can help in measuring each piece of dough. Remember, the more uniform the shapes, the more evenly they will bake, contributing to a delightful texture.

Storing and Serving Your Bagels

Once baked, let your bagels cool on a wire rack, which prevents them from getting soggy. You can enjoy them warm right away or store them for later. To keep them fresh, place the cooled bagels in an airtight container at room temperature for up to 2 days. For longer storage, consider slicing them in half and freezing. They freeze really well and can be toasted straight from the freezer, making for a quick and healthy breakfast any day of the week.

When it comes to serving, the versatility of these bagels is one of their best features. Enjoy them plain, or dress them up with your favorite toppings like cream cheese, avocado, or smoked salmon. I often add a sprinkle of everything bagel seasoning on top before baking for an extra flavor kick. Experiment with different toppings to suit your taste—these bagels can be as simple or extravagant as you like!

Ingredients

For the Bagels

  • 2 cups whole wheat flour
  • 1 cup Greek yogurt
  • 1 tablespoon baking powder
  • 1 teaspoon salt
  • 1 tablespoon honey (optional)
  • Water (as needed)

For the Topping

  • Sesame seeds
  • Poppy seeds
  • Coarse salt

Mix all the ingredients thoroughly to make the dough.

Instructions

Preheat the oven

Preheat your oven to 375°F (190°C) and line a baking sheet with parchment paper.

Make the dough

In a mixing bowl, combine whole wheat flour, baking powder, and salt. Gradually add Greek yogurt and mix until a dough forms. If too dry, add water little by little.

Shape the bagels

Divide the dough into 8 equal pieces. Roll each piece into a disc, then poke a hole in the center to form a bagel shape.

Add toppings

Brush the tops lightly with water, then sprinkle sesame seeds, poppy seeds, or coarse salt, as desired.

Bake the bagels

Place bagels on the prepared baking sheet, then bake in the preheated oven for 25 minutes, or until golden brown.

Cool and serve

Remove the bagels from the oven, let them cool for a few minutes on a wire rack, slice, and enjoy!

Enjoy these bagels fresh or toasted!

Pro Tips

  • For added flavor, consider mixing in herbs or spices into the dough. They can also be frozen for later use.

Troubleshooting Your Dough

If your dough appears too dry while mixing, add water gradually, a tablespoon at a time, until it comes together. This is particularly important with whole wheat flour, as its absorbency can vary. Conversely, if the dough becomes too sticky while kneading, a light dusting of flour can help manage it, but be cautious not to add too much—this could alter your bagels’ texture.

Another common issue is bagels that don't rise properly. Ensure your baking powder is fresh and activated; expired baking powder will not provide the necessary lift. Additionally, make sure to monitor the baking time closely. A slight underbake can lead to denser bagels, while overbaking will result in a hard texture.

Experimenting with Flavors

Don't hesitate to customize the flavor profile by incorporating ingredients into the dough. Finely chopped herbs such as chives or dried spices like garlic powder can elevate your bagels further. However, keep in mind that too much moisture from additional ingredients might require adjusting your yogurt or flour ratio to maintain the right consistency.

You can also experiment with sweeter variations by adding ingredients like cinnamon or dried fruit. These can be delightful for breakfast with a spread of nut butter. If you're feeling adventurous, consider using flavored Greek yogurt (like honey or vanilla) instead of plain for a different sweet note in your bagels.

Questions About Recipes

→ Can I use all-purpose flour instead of whole wheat?

Yes, you can, but the texture and nutrition will change.

→ Are these bagels gluten-free?

No, this recipe contains whole wheat flour, which contains gluten.

→ How do I store leftover bagels?

Store them in an airtight container at room temperature for a few days or freeze for longer storage.

→ Can I add other ingredients like cheese or herbs?

Absolutely! Feel free to customize with your favorite add-ins for more flavor.

Protein Bagels With Whole Wheat

I absolutely love making these Protein Bagels With Whole Wheat! They are a fantastic way to start the day, packed with flavor and nourishing ingredients. I’ve experimented with various recipes over the years, but this one strikes the perfect balance between taste and nutrition. Using whole wheat flour not only enhances the flavor but also boosts the fiber content. You can enjoy them plain or add your favorite toppings for a wholesome breakfast that keeps me energized all morning long.

Prep Time15 minutes
Cooking Duration25 minutes
Overall Time40 minutes

Created by: Skylar Jennings

Recipe Type: Balanced Food Studio

Skill Level: Easy

Final Quantity: 8 bagels

What You'll Need

For the Bagels

  1. 2 cups whole wheat flour
  2. 1 cup Greek yogurt
  3. 1 tablespoon baking powder
  4. 1 teaspoon salt
  5. 1 tablespoon honey (optional)
  6. Water (as needed)

For the Topping

  1. Sesame seeds
  2. Poppy seeds
  3. Coarse salt

How-To Steps

Step 01

Preheat your oven to 375°F (190°C) and line a baking sheet with parchment paper.

Step 02

In a mixing bowl, combine whole wheat flour, baking powder, and salt. Gradually add Greek yogurt and mix until a dough forms. If too dry, add water little by little.

Step 03

Divide the dough into 8 equal pieces. Roll each piece into a disc, then poke a hole in the center to form a bagel shape.

Step 04

Brush the tops lightly with water, then sprinkle sesame seeds, poppy seeds, or coarse salt, as desired.

Step 05

Place bagels on the prepared baking sheet, then bake in the preheated oven for 25 minutes, or until golden brown.

Step 06

Remove the bagels from the oven, let them cool for a few minutes on a wire rack, slice, and enjoy!

Extra Tips

  1. For added flavor, consider mixing in herbs or spices into the dough. They can also be frozen for later use.

Nutritional Breakdown (Per Serving)

  • Calories: 200 kcal
  • Total Fat: 2g
  • Saturated Fat: 1g
  • Cholesterol: 5mg
  • Sodium: 150mg
  • Total Carbohydrates: 38g
  • Dietary Fiber: 5g
  • Sugars: 1g
  • Protein: 10g